babetteexample1

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develop

A babette example.

Example #1: all default

Using all default settings, only specify a DNA alignment.

fasta_filename <- "primates.fas"
save_nexus_as_fasta(
  nexus_filename = beastier::get_beast2_example_filename("Primates.nex"),
  fasta_filename = fasta_filename
)

inference_results <- bbt_run(
  fasta_filename = fasta_filename
)

All other parameters are set to their defaults, as in BEAUti.

Result