pirouette
September 26, 2023 · View on GitHub
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master |  |  |
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pirouette is an R package that estimates the error BEAST2 makes from a given
phylogeny. This phylogeny can be created using any (non-BEAST) speciation model,
for example the Protracted Birth-Death or Multiple-Birth-Death models.
Common abbreviations
nsm: Nucleotide Substitution Modeltral: TRue ALignmenttwal: TWin ALignment
FAQ
See the FAQ.
There is a feature I miss
See CONTRIBUTING, at Submitting use cases
I want to collaborate
See CONTRIBUTING, at 'Submitting code'
I think I have found a bug
See CONTRIBUTING, at 'Submitting bugs'
There's something else I want to say
Sure, just add an Issue. Or send an email.
Package dependencies
master branches
| Package | | |
|---|---|---|
| beautier |  |  |
| beastier |  |  |
| mauricer |  |  |
| mcbette |  |  |
| tracerer |  |  |
develop branches
| Package | | |
|---|---|---|
| beautier |  |  |
| beastier |  |  |
| mauricer |  |  |
| mcbette |  |  |
| tracerer |  |  |
Windows
| Package | Status |
|---|---|
| babette_on_windows | |
| beastier_on_windows | |
| beautier_on_windows | |
| mauricer_on_windows | |
| tracerer_on_windows |
External links
References
- Bilderbeek, RJC, Laudanno, G, Etienne, RS. Quantifying the impact of an inference model in Bayesian phylogenetics. Methods Ecol Evol. 2020; 00: 1– 8. https://doi.org/10.1111/2041-210X.13514