lung-scrna

Analysis code related to characterizing lung regeneration induced by LPS using single cell RNA-seq.

Kent A. Riemondy, Nicole L. Jansing, Peng Jiang, Elizabeth F. Redente, Austin E. Gillen, Rui Fu, Alyssa J. Miller, Jason R. Spence, Anthony N. Gerber, Jay R. Hesselberth, Rachel L. Zemans (2019). Single cell RNA sequencing identifies TGFβ as a key regenerative cue following LPS-induced lung injury JCI insight. https://doi.org/10.1172/jci.insight.123637

Sequencing data is available from GEO series GSE113049

A UCSC interactive cellbrowser containing the data is also available here