APE_UseCases

November 26, 2020 · View on GitHub

The project cointains different scenarios where APE (the Automated Pipeline Explorer) can be used to automate the workflow composition. Most of the UseCases are modeling and trying to solve real-life problems in diferent domains (e.g. bioinformatisc, GIS).

List of use cases

Each of the uses cases represent a different scenario

/ImageMagick - a basic demonstration case of editing and constructing images using automaticaly synthesised scripts
- /Example1 - generate a postcard from an image
- /Example2 - change one color in the image to another color
/GeoGMT - case of solving a problem of map creation presented it [Kasalica and Lamprecht, 2020]
- /E0 - focuses on the initial workflow sinthesys step, labeled as E0 in the paper.
- /E1 - focuses on synthesis of an extended workflow (w.r.t. E0), labeled as E1 in the paper (Extension 1: Annotations).
/MassSpectometry - case of automated workflow composition in bioinformatics. more specifically mass spectrometry-based proteomics [Palmblad et al., 2019].
- /No1 - use case describes the 1st Use Case described in the paper, labeled as No. 1.
- /No2 - use case describes the 1st Use Case described in the paper, labeled as No. 2.
- /No3 - use case describes the 1st Use Case described in the paper, labeled as No. 3.
- /No4 - use case describes the 1st Use Case described in the paper, labeled as No. 4.