README.org

I recently discovered [[https://git.scicore.unibas.ch/TBRU/Treemmer][Treemmer]] ([[https://doi.org/10.1101/249391][Menardo et al., bioRxiv, 2018]]) for reducing the complexity of large trees down to a few representative taxa. Turned out to be really useful for my analyses!

Here are just a few crude lines of bash and R code to animate the process of Treemming a phylogenetic tree using [[https://github.com/GuangchuangYu/ggtree][ggtree]] & [[https://github.com/dgrtwo/gganimate][gganimate]].

#+BEGIN_SRC sh cd example ../treemmer-animate.sh tree.nwk Rscript ../treemmer-animate.R #+END_SRC

[[img/treemmer.gif]]