imarispy

August 13, 2021 ยท View on GitHub

Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer/Fiji

Note, Nikita Vladimirov has also developed a similar library (with better code structure and comments). https://github.com/nvladimus/npy2bdv

see also: PyImarisWriter from https://github.com/imaris/ImarisWriter