ANANSE-manuscript

Notebook files describing analyses in the ANANSE paper (Xu et al. 2021)

• model_training.ipynb - overview of training of binding prediction model
• download_and_benchmark_grns.ipynb - GRN benchmarking using different references
• gtex_grn_with_arboreto.ipynb - GRN inference on GTEx using GRNBoost2
• figure3_ananse_binding.ipynb - code to create Figure 3