HPC Training Bio-imaging

This material in under active development at the moment

Material for the HPC training for bioimaging analysis.

Introduction

HPC Infrastructure overview

BAND introduction

Data transfer with Globus

BAND Napari

BAND QuPath/CellPose/Others

Jupyter Notebooks

Conclusion

Links

• How to connect to the Open On Demand interface: https://tier.hpc.ugent.be
• How to install Globus for windows: : https://docs.globus.org/globus-connect-personal/install/windows/
• Documentation VSC: https://docs.vscentrum.be