napari-trackastra

July 16, 2026 · View on GitHub

A napari plugin for cell tracking with trackastra.

demo

Installation

Please install napari as outlined here.
After that, install the latest version of this plugin from PyPI with:
```
pip install napari-trackastra
```

Notes:

On Windows currently only supported for Python 3.10.

Usage

trackastra expects a timeseries of raw images and corresponding segmentations masks as input.
We provide some demo data at File > Open Sample > trackastra.
Tracked cells can be directly saved in
- Cell Tracking Challenge format (CTC)
- Graph Exchange File Format (GEFF)
Results can be drag-and-dropped back into napari for inspection.