Varying-Censoring Aware Matrix Factorization (VAMF)

September 15, 2017 ยท View on GitHub

VAMF is a probabilistic dimension reduction method for single cell RNA-Seq datasets. For details see the biorxiv preprint. VAMF is also implemented as an R package.

Repository Contents

  • algs- implementations of the VAMF algorithm as well as wrapper functions for competing methods.
  • final_figs- intermediate data and code for generating the figures used in the paper itself.
  • patel_2014, shalek_2013, trapnell_2014- code for processing the data used in the three studies. For the former, see also the data package
  • simulations- code for the noise only and latent clusters scenarios. Start with alg_tests.Rmd then sensitivity.Rmd

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