EpiScanpy – Epigenomics single cell analysis in python

EpiScanpy is a toolkit to analyse single-cell open chromatin (scATAC-seq) and single-cell DNA methylation (for example scBS-seq) data. EpiScanpy is the epigenomic extension of the very popular scRNA-seq analysis tool Scanpy (Genome Biology <https://doi.org/10.1186/s13059-017-1382-0>, 2018) [Wolf18]. For more information on scanpy, read the following documentation <https://scanpy.readthedocs.io>.

EpiScanpy paper is now accessible on Nature Communications <https://www.nature.com/articles/s41467-021-25131-3>. For more information on how to use the package, more information are available on the website <https://colomemaria.github.io/episcanpy_doc>.

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Documentation

The documentation for epiScanpy is available here <https://colomemaria.github.io/episcanpy_doc/>. If epiScanpy is useful to your research, consider citing epiScanpy <https://www.nature.com/articles/s41467-021-25131-3>.